Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3470KEGG: mab:MAB_0395c hypothetical protein. (293 aa)    
Predicted Functional Partners:
Tpau_3471
KEGG: nfa:nfa1060 hypothetical protein.
       0.778
Tpau_3046
KEGG: mab:MAB_3511c DNA helicase II; PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein.
   
 
 0.667
Tpau_0436
KEGG: rop:ROP_15710 putative endonuclease IV; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2.
 
 
 
 0.639
Tpau_1356
KEGG: sco:SCO2723 ABC transporter ATP-binding protein; PFAM: ABC transporter related; X-Pro dipeptidyl- peptidase domain protein; peptidase S15; SMART: AAA ATPase.
  
    0.554
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.536
Tpau_3472
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
       0.514
Tpau_1014
DEAD/H associated domain protein; KEGG: rop:ROP_63320 putative ATP-dependent helicase; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; AAA ATPase.
 
  
 0.503
Tpau_2338
Transcriptional regulator, MerR family; KEGG: rha:RHA1_ro00905 transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
  
   
 0.475
Tpau_4039
PFAM: ATP dependent DNA ligase; KEGG: rop:ROP_51680 ATP-dependent DNA ligase LigC.
 
  
 0.464
Tpau_2173
KEGG: rop:ROP_05710 putative 5'-3' exonuclease; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2.
 
 
 
 0.432
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.