Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpau_3491Hypothetical protein. (169 aa)    
Predicted Functional Partners:
Tpau_3492
PFAM: acyltransferase 3; KEGG: kra:Krad_0330 acyltransferase 3.
       0.773
Tpau_3493
PFAM: MspA family protein; KEGG: rop:ROP_30140 hypothetical protein.
       0.773
Tpau_3488
ABC transporter related protein; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.768
Tpau_3489
KEGG: tfu:Tfu_1435 putative integral membrane protein.
       0.768
Tpau_3490
KEGG: aoe:Clos_2750 hypothetical protein.
       0.768
Tpau_3494
PFAM: regulatory protein TetR; KEGG: bfa:Bfae_17920 transcriptional regulator, TetR family.
       0.513
Tpau_3487
PFAM: protein of unknown function DUF1205; glycosyl transferase family 28; KEGG: sen:SACE_0726 glycosyl transferase, NDP-D- desosamine: 3-L-mycarosyl erythronolide B.
       0.466
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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