Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3505KEGG: nfa:nfa25060 hypothetical protein. (527 aa)    
Predicted Functional Partners:
Tpau_3506
PFAM: protein of unknown function DUF305; KEGG: rer:RER_11580 hypothetical protein.
 
     0.888
Tpau_3504
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro05414 major facilitator superfamily multidrug transporter.
       0.485
Tpau_4190
KEGG: rop:ROP_32270 hypothetical membrane protein.
  
     0.453
Tpau_4095
KEGG: abo:ABO_2692 hypothetical protein.
  
     0.424
Tpau_2958
PFAM: regulatory protein TetR; KEGG: mmi:MMAR_3560 transcriptional regulatory protein.
  
     0.418
Tpau_1533
PFAM: Protein of unknown function DUF2236; KEGG: rer:RER_20960 hypothetical protein.
  
     0.403
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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