STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3520Allophanate hydrolase subunit 2; KEGG: ach:Achl_0175 UreA amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1. (510 aa)    
Predicted Functional Partners:
Tpau_1594
Urea amidolyase related protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: urea amidolyase related protein; KEGG: msm:MSMEG_2187 UreA amidolyase; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
 
 
0.997
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.993
Tpau_1212
KEGG: nfa:nfa46910 hypothetical protein.
  
  
 0.942
Tpau_0622
Transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: Transcriptional regulator IclR; regulatory protein IclR; KEGG: ach:Achl_3846 transcriptional regulator, IclR family; SMART: regulatory protein IclR.
  
    0.824
Tpau_1507
KEGG: rop:ROP_15450 putative IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
  
    0.824
Tpau_2032
Transcriptional regulator, IclR family; KEGG: mgi:Mflv_3174 regulatory protein, IclR; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR.
  
    0.824
Tpau_2849
KEGG: ami:Amir_6007 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
  
    0.824
Tpau_3009
KEGG: msm:MSMEG_3784 transcriptional regulator, IclR family protein; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
  
    0.824
Tpau_3598
KEGG: mab:MAB_4180 IclR family transcriptional regulator; PFAM: regulatory protein IclR; SMART: regulatory protein IclR.
  
    0.824
Tpau_3802
KEGG: rop:ROP_34190 putative IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
  
    0.824
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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