STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3548KEGG: rer:RER_48110 hypothetical protein. (101 aa)    
Predicted Functional Partners:
Tpau_3547
Thiosulfate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: mav:MAV_0756 putative thiosulfate sulfurtransferase; SMART: Rhodanese domain protein.
 
  
 0.911
Tpau_1395
KEGG: rer:RER_38230 hypothetical protein.
  
     0.711
Tpau_1108
TIGRFAM: anti-sigma factor; KEGG: nfa:nfa45830 putative anti-sigma factor.
  
     0.704
Tpau_2759
KEGG: mjl:Mjls_3464 hypothetical protein.
  
     0.700
Tpau_1710
KEGG: rha:RHA1_ro06639 hypothetical protein.
  
     0.694
Tpau_4191
KEGG: rer:RER_58370 hypothetical protein.
  
     0.660
Tpau_3546
KEGG: rop:ROP_49410 hypothetical protein.
 
     0.658
Tpau_3549
Hypothetical protein.
       0.636
Tpau_3550
methylated-DNA/protein- cysteinemethyltransferase; KEGG: kra:Krad_2866 methylated-DNA--protein- cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding.
       0.636
Tpau_3551
PFAM: 2OG-Fe(II) oxygenase; KEGG: jde:Jden_0402 2OG-Fe(II) oxygenase.
       0.636
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.