Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3584PFAM: protein of unknown function DUF1365; KEGG: rop:ROP_22850 hypothetical protein. (254 aa)    
Predicted Functional Partners:
Tpau_3585
KEGG: rop:ROP_22860 putative cyclopropane fatty acid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12.
  
 0.996
Tpau_3583
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02557 amine oxidase.
  
 0.984
Tpau_3586
PFAM: protein of unknown function DUF1295; KEGG: rop:ROP_22880 hypothetical membrane protein.
 
     0.959
Tpau_4014
KEGG: mva:Mvan_5532 cyclopropane-fatty-acyl- phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12.
  
 0.917
Tpau_0036
KEGG: mpa:MAP0135 CmaA1; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12.
  
 0.897
Tpau_3587
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rer:RER_19260 RNA polymerase ECF-type sigma factor SigK; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein.
 
     0.763
Tpau_3588
PFAM: Anti-sigma-K factor RskA; KEGG: rha:RHA1_ro02563 hypothetical protein.
 
     0.732
Tpau_3582
PFAM: domain of unknown function DUF1731; Male sterility domain; NAD-dependent epimerase/dehydratase; KEGG: mva:Mvan_3512 hypothetical protein.
       0.706
Tpau_3581
PFAM: beta-lactamase domain protein; KEGG: mjl:Mjls_5118 hypothetical protein.
       0.546
Tpau_3030
KEGG: kra:Krad_3554 deoxyribodipyrimidine photo- lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein.
 
  
 0.468
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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