Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Tpau_3587RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rer:RER_19260 RNA polymerase ECF-type sigma factor SigK; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein. (189 aa)    
Predicted Functional Partners:
Tpau_3588
PFAM: Anti-sigma-K factor RskA; KEGG: rha:RHA1_ro02563 hypothetical protein.
 
 
 0.991
Tpau_3772
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mab:MAB_3428c RNA polymerase sigma-C factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.833
Tpau_1107
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rop:ROP_64020 RNA polymerase ECF-type sigma factor SigH; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein.
  
   
 0.810
Tpau_3585
KEGG: rop:ROP_22860 putative cyclopropane fatty acid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12.
 
   
 0.803
Tpau_3583
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02557 amine oxidase.
 
  
 0.770
Tpau_3584
PFAM: protein of unknown function DUF1365; KEGG: rop:ROP_22850 hypothetical protein.
 
     0.763
Tpau_4064
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mab:MAB_1248 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.761
Tpau_3249
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mpa:MAP3621c RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.727
Tpau_3078
KEGG: kra:Krad_0794 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
  
     0.708
Tpau_4230
KEGG: cai:Caci_9040 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein.
  
   
0.675
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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