Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Tpau_3598KEGG: mab:MAB_4180 IclR family transcriptional regulator; PFAM: regulatory protein IclR; SMART: regulatory protein IclR. (290 aa)    
Predicted Functional Partners:
Tpau_1594
Urea amidolyase related protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: urea amidolyase related protein; KEGG: msm:MSMEG_2187 UreA amidolyase; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
  
  
 0.844
Tpau_3520
Allophanate hydrolase subunit 2; KEGG: ach:Achl_0175 UreA amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
  
  
 0.844
Tpau_3599
KEGG: mab:MAB_4179c hypothetical protein.
 
     0.798
Tpau_2467
KEGG: nfa:nfa11910 hypothetical protein.
  
     0.739
Tpau_3058
PFAM: Abortive infection protein; KEGG: mab:MAB_0497 hypothetical protein.
  
     0.718
Tpau_3601
KEGG: mab:MAB_4177c hypothetical protein.
 
     0.717
Tpau_3600
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mjl:Mjls_5029 short chain dehydrogenase.
 
     0.705
Tpau_2730
KEGG: mab:MAB_1013 hypothetical protein.
  
  
 0.691
Tpau_2466
PFAM: Uncharacterised conserved protein UCP07580; KEGG: rop:ROP_04670 hypothetical protein.
  
     0.688
Tpau_3803
KEGG: mab:MAB_1289c hypothetical protein.
  
     0.687
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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