Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Tpau_3607PFAM: protein of unknown function DUF418; protein of unknown function DUF405; KEGG: tfu:Tfu_0622 hypothetical protein. (407 aa)    
Predicted Functional Partners:
Tpau_1119
PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: nfa:nfa31750 hypothetical protein.
  
     0.570
Tpau_3606
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rha:RHA1_ro05664 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.553
Tpau_1007
PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: sen:SACE_0552 membrane spanning protein.
  
     0.510
Tpau_3628
Transcriptional regulator, ArsR family; KEGG: rha:RHA1_ro04775 hypothetical protein; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
  
     0.479
Tpau_0911
PFAM: NmrA family protein; KEGG: rop:ROP_40780 hypothetical protein.
 
     0.465
Tpau_2434
KEGG: rer:RER_54290 hypothetical protein.
  
     0.436
Tpau_3602
PFAM: extracellular solute-binding protein family 5; KEGG: rha:RHA1_ro03309 ABC peptide transporter, substrate-binding component.
       0.435
Tpau_3603
KEGG: rha:RHA1_ro03312 ABC peptide transporter, ATP- binding component; PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.435
Tpau_3604
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro03311 ABC peptide transporter, permease component.
       0.435
Tpau_3605
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rha:RHA1_ro03310 ABC peptide transporter, permease component.
       0.435
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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