Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3659KEGG: rop:ROP_18240 putative Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (128 aa)    
Predicted Functional Partners:
Tpau_3658
KEGG: rha:RHA1_ro02104 hypothetical protein.
       0.836
Tpau_2678
PFAM: Polyketide cyclase/dehydrase; cyclase/dehydrase; KEGG: rop:ROP_08470 hypothetical protein.
  
     0.764
Tpau_3042
PFAM: ABC-1 domain protein; KEGG: mab:MAB_3504 ABC transporter ATP-binding protein.
  
     0.719
Tpau_0664
KEGG: rer:RER_16370 hypothetical protein; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
  
     0.701
Tpau_0628
PFAM: Protein of unknown function DUF2596; KEGG: rha:RHA1_ro02072 hypothetical protein.
  
     0.693
Tpau_3657
KEGG: rop:ROP_18220 hypothetical membrane protein.
       0.689
Tpau_3936
PFAM: Anion-transporting ATPase; KEGG: rer:RER_04660 anion-transporting ATPase.
  
     0.682
Tpau_3660
PFAM: protein of unknown function DUF445; KEGG: rop:ROP_18250 hypothetical membrane protein.
       0.674
Tpau_3656
PFAM: alpha/beta hydrolase fold; KEGG: rop:ROP_18200 putative hydrolase.
       0.635
Tpau_4235
KEGG: mva:Mvan_6070 hypothetical protein.
  
     0.586
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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