Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Tpau_3662PFAM: low temperature requirement A; KEGG: rop:ROP_58670 hypothetical membrane protein. (412 aa)    
Predicted Functional Partners:
Tpau_3663
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nfa:nfa30340 short chain dehydrogenase.
       0.601
Tpau_0933
KEGG: mlo:mll2787 hypothetical protein.
 
     0.504
Tpau_3523
KEGG: bcv:Bcav_4148 hypothetical protein.
  
     0.436
Tpau_3664
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: mab:MAB_4658 LysR family transcriptional regulator.
       0.424
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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