Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3679PFAM: alpha/beta hydrolase fold; KEGG: rop:ROP_18600 hypothetical protein. (279 aa)    
Predicted Functional Partners:
Tpau_3680
KEGG: mav:MAV_4699 hypothetical protein.
       0.790
Tpau_4215
KEGG: rer:RER_59980 hypothetical protein.
  
     0.712
Tpau_3387
KEGG: cgt:cgR_0900 hypothetical protein.
  
     0.670
Tpau_3681
PFAM: protein of unknown function DUF344; KEGG: mab:MAB_4135c hypothetical protein.
       0.654
Tpau_0370
KEGG: rop:ROP_52280 hypothetical membrane protein.
  
     0.649
Tpau_4095
KEGG: abo:ABO_2692 hypothetical protein.
  
     0.647
Tpau_1951
KEGG: rha:RHA1_ro06905 hypothetical protein.
  
     0.580
Tpau_3682
PFAM: regulatory protein TetR; KEGG: bte:BTH_II1794 transcriptional regulator.
 
     0.579
Tpau_2657
KEGG: rop:ROP_08270 hypothetical protein.
  
     0.564
Tpau_1333
Hypothetical protein; KEGG: rha:RHA1_ro05481 protease.
  
     0.521
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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