Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Tpau_3680KEGG: mav:MAV_4699 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Tpau_3679
PFAM: alpha/beta hydrolase fold; KEGG: rop:ROP_18600 hypothetical protein.
       0.790
Tpau_2066
KEGG: mjl:Mjls_0871 hypothetical protein.
  
     0.746
Tpau_1406
KEGG: mab:MAB_0672c hypothetical protein.
  
     0.744
Tpau_0881
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.720
Tpau_0123
KEGG: svi:Svir_26770 hypothetical protein.
  
     0.716
Tpau_2985
KEGG: rha:RHA1_ro04737 hypothetical protein.
  
     0.716
Tpau_3681
PFAM: protein of unknown function DUF344; KEGG: mab:MAB_4135c hypothetical protein.
       0.710
Tpau_1490
PFAM: cutinase; KEGG: msm:MSMEG_1403 cutinase superfamily protein.
  
     0.701
Tpau_3922
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.699
Tpau_0332
Secretion protein snm4; KEGG: msm:MSMEG_0068 transmembrane protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.686
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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