Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3690PFAM: formyl transferase domain protein; KEGG: rop:ROP_48100 putative formyltransferase. (311 aa)    
Predicted Functional Partners:
Tpau_2566
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: rop:ROP_69450 putative rRNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.965
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 
0.916
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
     
 0.910
Tpau_3691
L-lysine 6-monooxygenase (NADPH); KEGG: rer:RER_09790 L-ornithine N5-oxygenase.
 
   
 0.875
Tpau_3689
PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: fal:FRAAL4165 putative ABC transporter transmembrane protein.
 
   
 0.858
Tpau_3688
KEGG: cef:CE1565 putative ABC transporter permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
   
 0.854
Tpau_3684
PFAM: isochorismatase hydrolase; KEGG: rer:RER_26990 isochorismatase.
 
     0.810
Tpau_3687
PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: ami:Amir_2724 siderophore-interacting protein.
 
   
 0.809
Tpau_3686
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rop:ROP_48850 2,3-dihydro-2,3- dihydroxybenzoate dehydrogenase.
 
   
 0.807
Tpau_3685
PFAM: AMP-dependent synthetase and ligase; KEGG: rop:ROP_48840 2,3-dihydroxybenzoate-AMP ligase.
       0.784
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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