Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3712KEGG: art:Arth_3129 hypothetical protein. (294 aa)    
Predicted Functional Partners:
Tpau_0807
HNH endonuclease; KEGG: mav:MAV_4456 13e12 repeat-containing protein; PFAM: HNH endonuclease; SMART: HNH nuclease.
  
     0.582
Tpau_1927
PFAM: RDD domain containing protein; KEGG: bcv:Bcav_3212 FHA domain containing protein.
  
     0.530
Tpau_3392
KEGG: rer:RER_17190 hypothetical protein.
  
     0.502
Tpau_3713
KEGG: cms:CMS_2210 hypothetical protein.
       0.481
Tpau_2293
Protein of unknown function DUF222; KEGG: rha:RHA1_ro02511 hypothetical protein; PFAM: protein of unknown function DUF222; HNH endonuclease; SMART: HNH nuclease.
  
     0.461
Tpau_2121
KEGG: sen:SACE_3425 hypothetical protein.
  
     0.433
Tpau_4127
PFAM: protein of unknown function DUF222; HNH endonuclease; KEGG: rha:RHA1_ro02511 hypothetical protein.
  
     0.433
Tpau_3651
KEGG: msm:MSMEG_0923 hypothetical protein.
  
     0.431
Tpau_1406
KEGG: mab:MAB_0672c hypothetical protein.
  
     0.425
Tpau_3736
KEGG: bcv:Bcav_0551 hypothetical protein.
  
     0.423
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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