Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Tpau_3742KEGG: rer:RER_29430 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (312 aa)    
Predicted Functional Partners:
Tpau_3741
KEGG: rha:RHA1_ro02186 ABC transporter permease.
 
     0.924
Tpau_3740
Membrane protein AbrB duplication; KEGG: kra:Krad_3869 putative ammonia monooxygenase; TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase.
       0.503
Tpau_3743
Transcriptional regulator, LuxR family; KEGG: mva:Mvan_1565 response regulator receiver protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
       0.497
Tpau_0100
KEGG: rha:RHA1_ro02954 anibiotic ABC transporter efflux pump.
  
 
 0.473
Tpau_1355
KEGG: sma:SAV_5345 ABC transporter integral membrane protein.
 
 
 0.472
Tpau_3688
KEGG: cef:CE1565 putative ABC transporter permease protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
 0.469
Tpau_3689
PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: fal:FRAAL4165 putative ABC transporter transmembrane protein.
 
 0.461
Tpau_3986
PFAM: ABC-2 type transporter; KEGG: nfa:nfa31150 putative ABC transporter membrane protein.
 
  
 0.443
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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