Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3814PPOX class putative F420-dependent enzyme; KEGG: msm:MSMEG_0048 pyridoxamine 5'-phosphate oxidase family protein; TIGRFAM: PPOX class probable F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding. (165 aa)    
Predicted Functional Partners:
Tpau_3813
KEGG: rer:RER_08830 hypothetical protein.
       0.778
Tpau_3815
PFAM: 2-nitropropane dioxygenase NPD; KEGG: rer:RER_09370 oxidoreductase.
       0.778
Tpau_3816
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro04688 enoyl-CoA hydratase.
       0.537
Tpau_3062
PFAM: protein of unknown function UPF0089; KEGG: mab:MAB_1278 hypothetical protein.
  
     0.517
Tpau_3503
PFAM: acyl-ACP thioesterase; KEGG: nfa:nfa50880 hypothetical protein.
  
     0.500
Tpau_2240
KEGG: rop:ROP_69240 hypothetical membrane protein.
  
     0.477
Tpau_2298
PFAM: Polyketide cyclase/dehydrase; KEGG: rer:RER_45260 hypothetical protein.
  
     0.471
Tpau_2465
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro00436 hypothetical protein.
  
    0.456
Tpau_4180
PFAM: Protein of unknown function DUF2236; KEGG: msm:MSMEG_3590 hypothetical protein.
  
     0.456
Tpau_2315
KEGG: nfa:nfa18640 hypothetical protein.
  
     0.433
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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