STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3815PFAM: 2-nitropropane dioxygenase NPD; KEGG: rer:RER_09370 oxidoreductase. (367 aa)    
Predicted Functional Partners:
Tpau_3814
PPOX class putative F420-dependent enzyme; KEGG: msm:MSMEG_0048 pyridoxamine 5'-phosphate oxidase family protein; TIGRFAM: PPOX class probable F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.782
Tpau_3813
KEGG: rer:RER_08830 hypothetical protein.
       0.781
Tpau_1315
PFAM: MaoC domain protein dehydratase; Beta- ketoacyl synthase; Acyl transferase; domain of unknown function DUF1729; KEGG: nfa:nfa12570 putative fatty acid synthase.
  
  
 0.753
Tpau_3816
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro04688 enoyl-CoA hydratase.
 
  
 0.707
Tpau_3819
KEGG: rer:RER_09310 hypothetical protein.
 
    0.699
Tpau_3818
PFAM: protein of unknown function DUF35; KEGG: rop:ROP_47840 hypothetical protein.
 
     0.676
Tpau_3857
KEGG: nfa:nfa4520 hypothetical protein.
 
    0.673
Tpau_3856
PFAM: protein of unknown function DUF35; KEGG: rha:RHA1_ro04486 hypothetical protein.
 
     0.672
Tpau_3820
KEGG: nfa:nfa5210 acetyl-CoA acetyltransferase.
 
    0.620
Tpau_3476
KEGG: stp:Strop_2778 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; Thioesterase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding.
  
 
 0.567
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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