Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3853KEGG: nfa:nfa5190 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Tpau_3858
KEGG: rer:RER_07120 hypothetical protein.
 
  
  0.982
Tpau_3848
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rer:RER_07370 3-keto-5alpha-steroid delta(1)- dehydrogenase KstD3.
  
  
  0.965
Tpau_3854
PFAM: Luciferase-like, subgroup; KEGG: nfa:nfa29530 hypothetical protein.
 
     0.935
Tpau_3856
PFAM: protein of unknown function DUF35; KEGG: rha:RHA1_ro04486 hypothetical protein.
 
     0.888
Tpau_3857
KEGG: nfa:nfa4520 hypothetical protein.
 
     0.888
Tpau_3855
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: nca:Noca_2790 acyl-CoA dehydrogenase domain- containing protein.
 
     0.856
Tpau_3818
PFAM: protein of unknown function DUF35; KEGG: rop:ROP_47840 hypothetical protein.
 
     0.808
Tpau_3819
KEGG: rer:RER_09310 hypothetical protein.
 
     0.802
Tpau_3849
Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: rha:RHA1_ro04538 ketosteroid-9-alpha- hydroxylase, oxygenase.
 
     0.773
Tpau_3843
Biphenyl-2,3-diol 1,2-dioxygenase; KEGG: mab:MAB_0585 2,3-dihydroxybiphenyl 1,2- dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.769
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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