Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3856PFAM: protein of unknown function DUF35; KEGG: rha:RHA1_ro04486 hypothetical protein. (322 aa)    
Predicted Functional Partners:
Tpau_3857
KEGG: nfa:nfa4520 hypothetical protein.
 0.999
Tpau_3855
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: nca:Noca_2790 acyl-CoA dehydrogenase domain- containing protein.
 
 
 0.998
Tpau_3858
KEGG: rer:RER_07120 hypothetical protein.
 
 0.998
Tpau_3820
KEGG: nfa:nfa5210 acetyl-CoA acetyltransferase.
 
 
 0.937
Tpau_3819
KEGG: rer:RER_09310 hypothetical protein.
 
 
 0.919
Tpau_3853
KEGG: nfa:nfa5190 hypothetical protein.
 
     0.888
Tpau_3822
TIGRFAM: acetyl-CoA acetyltransferase; KEGG: rop:ROP_47770 putative acetyl-CoA acyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.833
Tpau_3859
PFAM: thioesterase superfamily protein; KEGG: rer:RER_16990 hypothetical protein.
 
     0.819
Tpau_3788
PFAM: regulatory protein TetR; KEGG: mjl:Mjls_5098 TetR family transcriptional regulator.
 
     0.798
Tpau_3854
PFAM: Luciferase-like, subgroup; KEGG: nfa:nfa29530 hypothetical protein.
 
     0.795
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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