Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3858KEGG: rer:RER_07120 hypothetical protein. (390 aa)    
Predicted Functional Partners:
Tpau_3856
PFAM: protein of unknown function DUF35; KEGG: rha:RHA1_ro04486 hypothetical protein.
 
 0.998
Tpau_3857
KEGG: nfa:nfa4520 hypothetical protein.
 
 0.997
Tpau_3853
KEGG: nfa:nfa5190 hypothetical protein.
 
  
  0.982
Tpau_3855
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: nca:Noca_2790 acyl-CoA dehydrogenase domain- containing protein.
 
 0.980
Tpau_3848
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rer:RER_07370 3-keto-5alpha-steroid delta(1)- dehydrogenase KstD3.
  
 0.974
Tpau_0342
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: mab:MAB_0851 fatty oxidation protein FadB.
  
 0.948
Tpau_4183
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: mab:MAB_0851 fatty oxidation protein FadB.
  
 0.948
Tpau_3818
PFAM: protein of unknown function DUF35; KEGG: rop:ROP_47840 hypothetical protein.
 
 
 0.887
Tpau_3838
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nfa:nfa4810 putative acyl-CoA dehydrogenase.
 
 0.871
Tpau_3835
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nfa:nfa4840 putative acyl-CoA dehydrogenase.
 
 0.861
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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