Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3861KEGG: nfa:nfa14200 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Tpau_3862
Hypothetical protein.
       0.628
Tpau_0810
Hypothetical protein; KEGG: bay:RBAM_002560 YqeB.
  
   
 0.568
Tpau_1059
KEGG: rer:RER_40920 hypothetical protein.
  
     0.528
Tpau_0370
KEGG: rop:ROP_52280 hypothetical membrane protein.
  
     0.520
Tpau_2325
PFAM: cytochrome b5; fatty acid desaturase; KEGG: nfa:nfa49300 hypothetical protein.
  
     0.516
Tpau_3972
PFAM: beta-lactamase; KEGG: rop:ROP_02950 hypothetical protein.
  
     0.502
Tpau_2442
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sma:SAV_3908 hydrolase.
 
     0.491
Tpau_3860
KEGG: nfa:nfa6070 hypothetical protein.
       0.488
Tpau_3125
PFAM: Protein of unknown function DUF2266, transmembrane; KEGG: ret:RHE_CH00472 hypothetical protein.
  
     0.483
Tpau_3627
KEGG: rha:RHA1_ro04776 hypothetical protein.
  
     0.481
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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