Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3863Band 7 protein; KEGG: cef:CE2656 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein. (306 aa)    
Predicted Functional Partners:
Tpau_3864
KEGG: sma:SAV_3227 hypothetical protein.
 
  
 0.989
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.832
Tpau_1739
PFAM: peptidase M16 domain protein; KEGG: rha:RHA1_ro06734 metalloendopeptidase; Belongs to the peptidase M16 family.
  
 0.692
Tpau_4228
TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: sen:SACE_6025 DNA-3-methyladenine glycosylase I protein; PFAM: methyladenine glycosylase.
  
    0.621
Tpau_2363
PFAM: protein of unknown function DUF1684; KEGG: ami:Amir_2981 protein of unknown function DUF1684.
 
   
 0.594
Tpau_1537
PFAM: cytochrome c oxidase subunit II; KEGG: nfa:nfa17080 putative cytochrome c oxidase subunit II.
   
 
 0.589
Tpau_3865
PFAM: periplasmic binding protein; KEGG: rer:RER_23560 iron-siderophore binding protein.
       0.554
Tpau_2091
Band 7 protein; KEGG: rop:ROP_70070 stomatin family protein; PFAM: band 7 protein; SMART: band 7 protein.
      
 0.535
Tpau_3862
Hypothetical protein.
       0.533
Tpau_2287
PFAM: band 7 protein; KEGG: rer:RER_05390 hypothetical protein.
    
 0.504
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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