Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3904PFAM: Resolvase domain; Recombinase; KEGG: mva:Mvan_1448 recombinase. (460 aa)    
Predicted Functional Partners:
Tpau_3905
KEGG: nfa:nfa3620 hypothetical protein.
       0.777
Tpau_3908
PFAM: type II secretion system protein E; KEGG: nfa:nfa3590 hypothetical protein.
     
 0.732
Tpau_3906
PFAM: Type II secretion system F domain; KEGG: msm:MSMEG_6167 type II secretion system protein F.
       0.709
Tpau_3907
PFAM: Type II secretion system F domain; KEGG: mva:Mvan_5406 type II secretion system protein.
       0.709
Tpau_3909
KEGG: msm:MSMEG_6171 hypothetical protein.
       0.705
Tpau_3910
HAD-superfamily subfamily IB hydrolase; KEGG: mmi:MMAR_5149 phosphoserine phosphatase SerB; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); PFAM: Haloacid dehalogenase domain protein hydrolase.
       0.496
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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