Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3907PFAM: Type II secretion system F domain; KEGG: mva:Mvan_5406 type II secretion system protein. (269 aa)    
Predicted Functional Partners:
Tpau_3908
PFAM: type II secretion system protein E; KEGG: nfa:nfa3590 hypothetical protein.
  
 
 0.992
Tpau_3906
PFAM: Type II secretion system F domain; KEGG: msm:MSMEG_6167 type II secretion system protein F.
 
  
  0.985
Tpau_3909
KEGG: msm:MSMEG_6171 hypothetical protein.
 
  
 0.918
Tpau_3274
PFAM: SAF domain protein; KEGG: msm:MSMEG_5481 hypothetical protein.
 
  
 0.843
Tpau_3905
KEGG: nfa:nfa3620 hypothetical protein.
 
   
 0.830
Tpau_3904
PFAM: Resolvase domain; Recombinase; KEGG: mva:Mvan_1448 recombinase.
       0.709
Tpau_2899
PFAM: amino acid-binding ACT domain protein; KEGG: nfa:nfa42600 hypothetical protein.
  
     0.667
Tpau_4049
KEGG: nfa:nfa2370 hypothetical protein.
  
     0.655
Tpau_4225
Glycoprotein; KEGG: rha:RHA1_ro03643 glycoprotein.
  
     0.653
Tpau_2653
KEGG: mkm:Mkms_3325 FHA domain-containing protein.
  
     0.642
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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