Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3908PFAM: type II secretion system protein E; KEGG: nfa:nfa3590 hypothetical protein. (393 aa)    
Predicted Functional Partners:
Tpau_3906
PFAM: Type II secretion system F domain; KEGG: msm:MSMEG_6167 type II secretion system protein F.
  
 
 0.992
Tpau_3907
PFAM: Type II secretion system F domain; KEGG: mva:Mvan_5406 type II secretion system protein.
  
 
 0.992
Tpau_3909
KEGG: msm:MSMEG_6171 hypothetical protein.
 
  
 0.947
Tpau_3905
KEGG: nfa:nfa3620 hypothetical protein.
     
 0.871
Tpau_3904
PFAM: Resolvase domain; Recombinase; KEGG: mva:Mvan_1448 recombinase.
     
 0.732
Tpau_3910
HAD-superfamily subfamily IB hydrolase; KEGG: mmi:MMAR_5149 phosphoserine phosphatase SerB; TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase- like); PFAM: Haloacid dehalogenase domain protein hydrolase.
       0.668
Tpau_3885
KEGG: rop:ROP_42540 hypothetical membrane protein.
  
  
 0.583
Tpau_3274
PFAM: SAF domain protein; KEGG: msm:MSMEG_5481 hypothetical protein.
  
  
 0.504
Tpau_3884
KEGG: rer:RER_05090 hypothetical protein.
     
 0.500
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.