Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3917PFAM: protein of unknown function DUF990; KEGG: fal:FRAAL3907 putative ABC-type uncharacterized transport system, permease component. (284 aa)    
Predicted Functional Partners:
Tpau_3918
PFAM: protein of unknown function DUF990; KEGG: fal:FRAAL3906 putative integral membrane transport protein.
 
  
 0.969
Tpau_3919
KEGG: nfa:nfa21680 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.969
acsA
acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.660
Tpau_1269
PFAM: extracellular solute-binding protein family 1; KEGG: ami:Amir_4241 extracellular solute-binding protein family 1.
  
     0.578
Tpau_0853
PFAM: regulatory protein TetR; KEGG: sco:SCO0241 transcriptional regulator.
  
     0.537
lysS
TIGRFAM: lysyl-tRNA synthetase; KEGG: sma:SAV_4749 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.460
Tpau_0974
Hypothetical protein; KEGG: pjd:Pjdr2_3229 phytanoyl-CoA dioxygenase.
  
     0.441
Tpau_1270
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV_2093 sugar ABC transporter permeases protein.
 
     0.432
Tpau_3912
KEGG: rer:RER_05000 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.427
Tpau_3913
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: car:cauri_0213 iron ABC transport system, permease protein.
       0.427
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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