Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3942KEGG: rha:RHA1_ro02978 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Tpau_3941
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rop:ROP_41680 enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.829
Tpau_3943
PFAM: regulatory protein TetR; KEGG: rop:ROP_27770 putative TetR family transcriptional regulator.
       0.737
Tpau_3944
PFAM: Carotenoid oxygenase; KEGG: msm:MSMEG_1564 lignostilbene-alpha,beta- dioxygenase.
       0.526
Tpau_0845
KEGG: rha:RHA1_ro04983 hypothetical protein.
  
     0.524
Tpau_0513
KEGG: rop:ROP_56120 hypothetical membrane protein.
  
     0.501
Tpau_3208
PFAM: Limonene-12-epoxide hydrolase; KEGG: mmi:MMAR_1973 hypothetical protein.
  
     0.497
Tpau_3940
Hypothetical protein.
       0.497
Tpau_2076
KEGG: rop:ROP_69960 hypothetical membrane protein.
  
     0.486
Tpau_0600
KEGG: rha:RHA1_ro04458 hypothetical protein.
 
     0.479
Tpau_2535
PFAM: Limonene-12-epoxide hydrolase; KEGG: mmi:MMAR_1973 hypothetical protein.
  
     0.466
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.