Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_3970Putative transcriptional regulator, PucR family; KEGG: rha:RHA1_ro04493 hypothetical protein. (406 aa)    
Predicted Functional Partners:
Tpau_3968
PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: rha:RHA1_ro04491 poly(3-hydroxyalkanoic acid) synthase.
 
     0.724
Tpau_3966
KEGG: rha:RHA1_ro04489 PHA depolymerase; TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold.
 
     0.672
Tpau_0799
KEGG: rer:RER_07590 hypothetical protein.
  
     0.594
Tpau_3971
PFAM: regulatory protein LysR; KEGG: rha:RHA1_ro00176 LysR family transcriptional regulator.
  
    0.561
Tpau_3972
PFAM: beta-lactamase; KEGG: rop:ROP_02950 hypothetical protein.
       0.549
Tpau_3969
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro04492 acyl-CoA synthetase.
       0.499
Tpau_1724
KEGG: nfa:nfa3120 hypothetical protein.
  
     0.484
Tpau_1918
KEGG: svi:Svir_09690 hypothetical protein.
  
     0.483
Tpau_1307
Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: rop:ROP_56700 putative CdaR family transcriptional regulator.
 
     0.467
Tpau_3967
Enoyl-CoA hydratase; KEGG: rha:RHA1_ro03777 nodulation protein; PFAM: MaoC domain protein dehydratase.
       0.429
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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