Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_3972PFAM: beta-lactamase; KEGG: rop:ROP_02950 hypothetical protein. (305 aa)    
Predicted Functional Partners:
Tpau_3971
PFAM: regulatory protein LysR; KEGG: rha:RHA1_ro00176 LysR family transcriptional regulator.
 
   
 0.837
Tpau_3973
PFAM: penicillin-binding protein transpeptidase; KEGG: msm:MSMEG_6319 penicillin-binding protein, transpeptidase.
     
 0.615
Tpau_3970
Putative transcriptional regulator, PucR family; KEGG: rha:RHA1_ro04493 hypothetical protein.
       0.549
Tpau_3861
KEGG: nfa:nfa14200 hypothetical protein.
  
     0.502
Tpau_0650
KEGG: rha:RHA1_ro04522 TetR family transcriptional regulator.
  
     0.496
Tpau_1059
KEGG: rer:RER_40920 hypothetical protein.
 
     0.481
Tpau_3974
Hypothetical protein.
       0.448
Tpau_2943
PFAM: periplasmic binding protein; KEGG: rop:ROP_64970 putative ABC transporter substrate-binding protein.
 
     0.403
trpF
KEGG: rer:RER_48400 phosphoriborylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Belongs to the TrpF family.
       0.402
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.