Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4001PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mab:MAB_1972c hypothetical protein. (248 aa)    
Predicted Functional Partners:
Tpau_4002
PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; KEGG: rha:RHA1_ro04218 UDP-N-acetylmuramoylalanine-- D-glutamate ligase.
       0.566
Tpau_4003
PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: rop:ROP_41440 hypothetical protein.
       0.563
Tpau_0483
PFAM: metallophosphoesterase; KEGG: rop:ROP_04920 serine/threonine protein phosphatase PrpA.
   
   0.530
Tpau_1606
PFAM: monooxygenase FAD-binding; KEGG: mab:MAB_1646c hypothetical protein.
 
 
 0.527
Tpau_0392
PFAM: monooxygenase FAD-binding; KEGG: kra:Krad_0778 monooxygenase FAD-binding.
 
 
 0.489
Tpau_0310
PFAM: monooxygenase FAD-binding; KEGG: sco:SCO3245 salicylate hydroxylase (secreted protein).
 
 
 0.480
Tpau_3496
PFAM: ABC-2 type transporter; KEGG: rer:RER_47100 ABC transporter permease protein.
 
   
 0.410
Tpau_2424
PFAM: monooxygenase FAD-binding; KEGG: sen:SACE_6186 monooxygenase, FAD-binding.
   
 0.406
Tpau_2814
PFAM: monooxygenase FAD-binding; KEGG: mmi:MMAR_2987 3-(3-hydroxyphenyl)propionate hydroxylase.
   
 0.406
Tpau_2962
PFAM: monooxygenase FAD-binding; KEGG: mva:Mvan_5278 monooxygenase, FAD-binding.
   
 0.406
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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