Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4005Cyclase/dehydrase; KEGG: sma:SAV_7402 cyclase/dehydrase. (164 aa)    
Predicted Functional Partners:
Tpau_3991
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; globin; KEGG: rop:ROP_19740 flavohemoprotein; Belongs to the globin family.
  
  
 0.900
Tpau_4004
methylated-DNA/protein- cysteinemethyltransferase; KEGG: scl:sce0906 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding.
 
   
 0.809
Tpau_4006
PFAM: protein of unknown function DUF664; KEGG: sco:SCO2990 hypothetical protein.
       0.773
Tpau_1918
KEGG: svi:Svir_09690 hypothetical protein.
  
     0.611
Tpau_1805
KEGG: nfa:nfa23590 putative transcriptional regulator.
  
     0.559
Tpau_4007
KEGG: sen:SACE_0256 hypothetical protein.
       0.543
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.543
Tpau_4009
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.543
Tpau_4010
KEGG: rer:RER_03890 hydrolase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
 
     0.536
Tpau_0059
KEGG: mpa:MAP0961c hypothetical protein.
  
     0.524
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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