Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4012PFAM: Polyketide cyclase/dehydrase; KEGG: rop:ROP_41360 hypothetical protein. (148 aa)    
Predicted Functional Partners:
Tpau_4011
PFAM: pseudouridine synthase; KEGG: ami:Amir_5332 pseudouridine synthase.
       0.835
Tpau_4013
PFAM: FAD linked oxidase domain protein; KEGG: rop:ROP_41350 hypothetical protein.
       0.673
Tpau_4014
KEGG: mva:Mvan_5532 cyclopropane-fatty-acyl- phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12.
       0.673
Tpau_1122
KEGG: rop:ROP_64210 hypothetical membrane protein.
  
  
 0.592
Tpau_2426
PFAM: UspA domain protein; KEGG: rop:ROP_07030 putative Usp family protein.
  
     0.591
Tpau_0168
PFAM: putative esterase; LGFP repeat protein; KEGG: nfa:nfa1840 putative esterase.
  
  
 0.430
Tpau_4201
PFAM: protein of unknown function DUF475; Integral membrane protein TerC; KEGG: nfa:nfa55690 hypothetical protein.
  
     0.430
Tpau_0296
PFAM: DoxX family protein; KEGG: rop:ROP_07010 hypothetical protein.
  
     0.427
Tpau_1068
KEGG: mab:MAB_1363 hypothetical protein.
  
     0.427
Tpau_2653
KEGG: mkm:Mkms_3325 FHA domain-containing protein.
  
     0.409
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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