STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_4023KEGG: fre:Franean1_1509 alpha/beta hydrolase fold. (282 aa)    
Predicted Functional Partners:
Tpau_4024
KEGG: rop:ROP_55300 hypothetical protein.
       0.651
Tpau_4025
KEGG: mab:MAB_1171c hypothetical protein.
       0.651
Tpau_4026
PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro05146 hydrolase.
 
     0.591
Tpau_4022
PFAM: Activator of Hsp90 ATPase 1 family protein; Polyketide cyclase/dehydrase; KEGG: rop:ROP_42160 hypothetical protein.
       0.562
Tpau_0475
PFAM: alpha/beta hydrolase fold; KEGG: cmi:CMM_2872 putative hydrolase/acyltransferase.
  
     0.544
Tpau_0587
PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: mgi:Mflv_1435 alpha/beta hydrolase fold.
  
     0.495
Tpau_1121
PFAM: alpha/beta hydrolase fold; KEGG: svi:Svir_06730 predicted hydrolase or acyltransferase of alpha/beta superfamily.
  
     0.486
Tpau_3521
PFAM: alpha/beta hydrolase fold; KEGG: bcv:Bcav_0203 alpha/beta hydrolase fold protein.
  
     0.444
Tpau_3257
PFAM: alpha/beta hydrolase fold; KEGG: rop:ROP_62750 putative hydrolase.
  
     0.409
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.