Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_4026PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro05146 hydrolase. (280 aa)    
Predicted Functional Partners:
Tpau_4023
KEGG: fre:Franean1_1509 alpha/beta hydrolase fold.
 
     0.590
Tpau_4024
KEGG: rop:ROP_55300 hypothetical protein.
       0.499
Tpau_4025
KEGG: mab:MAB_1171c hypothetical protein.
       0.498
Tpau_1333
Hypothetical protein; KEGG: rha:RHA1_ro05481 protease.
 
   
 0.409
Tpau_2242
KEGG: nfa:nfa51010 hypothetical protein.
 
 0.401
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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