Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4037Transcriptional regulator, AsnC family; KEGG: msm:MSMEG_4457 regulatory protein, AsnC/Lrp; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type. (296 aa)    
Predicted Functional Partners:
Tpau_4035
PFAM: Amidohydrolase 3; amidohydrolase; KEGG: rha:RHA1_ro06548 hypothetical protein.
 
     0.593
Tpau_4034
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: krh:KRH_21370 putative acetolactate synthase large subunit; Belongs to the TPP enzyme family.
 
  
 0.571
Tpau_4036
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: rha:RHA1_ro06547 major facilitator transporter.
       0.482
Tpau_0447
PFAM: aminotransferase class-III; KEGG: msm:MSMEG_2450 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.427
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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