Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_4069KEGG: mab:MAB_1242c hypothetical protein. (191 aa)    
Predicted Functional Partners:
Tpau_4067
KEGG: mab:MAB_1244c hypothetical protein.
       0.782
Tpau_4068
KEGG: mab:MAB_1243c hypothetical protein.
       0.782
Tpau_4065
PFAM: protein of unknown function DUF322; KEGG: mab:MAB_1247c hypothetical protein.
     
 0.779
Tpau_4066
Response regulator receiver protein; KEGG: mab:MAB_1246c hypothetical protein.
       0.779
Tpau_4070
PFAM: CsbD family protein; KEGG: mab:MAB_1241c hypothetical protein; Belongs to the UPF0337 (CsbD) family.
       0.608
Tpau_4064
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mab:MAB_1248 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.563
Tpau_4063
KEGG: mab:MAB_1249 hypothetical protein.
       0.421
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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