Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4070PFAM: CsbD family protein; KEGG: mab:MAB_1241c hypothetical protein; Belongs to the UPF0337 (CsbD) family. (69 aa)    
Predicted Functional Partners:
Tpau_4066
Response regulator receiver protein; KEGG: mab:MAB_1246c hypothetical protein.
 
     0.796
Tpau_4065
PFAM: protein of unknown function DUF322; KEGG: mab:MAB_1247c hypothetical protein.
 
   
 0.727
Tpau_4067
KEGG: mab:MAB_1244c hypothetical protein.
       0.623
Tpau_4068
KEGG: mab:MAB_1243c hypothetical protein.
       0.623
Tpau_4069
KEGG: mab:MAB_1242c hypothetical protein.
       0.608
Tpau_0832
KEGG: nfa:nfa6480 hypothetical protein.
  
     0.498
Tpau_1343
PPOX class putative F420-dependent enzyme; KEGG: cai:Caci_7774 pyridoxamine 5'-phosphate oxidase-related FMN-binding; TIGRFAM: PPOX class probable F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
 
    0.461
Tpau_4064
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: mab:MAB_1248 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.458
Tpau_0959
PFAM: ABC-2 type transporter; KEGG: aau:AAur_3851 putative ABC transporter, efflux permease protein.
 
    0.432
Tpau_2497
KEGG: nfa:nfa49840 hypothetical protein; PFAM: Curculin domain protein (mannose-binding) lectin; Peptidoglycan-binding lysin domain; SMART: Curculin domain protein (mannose-binding) lectin; Peptidoglycan-binding LysM.
  
    0.430
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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