STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_4078PFAM: acyltransferase 3; KEGG: msm:MSMEG_5041 acyltransferase. (378 aa)    
Predicted Functional Partners:
Tpau_4077
KEGG: rop:ROP_15670 hypothetical protein.
       0.847
Tpau_4079
KEGG: msm:MSMEG_5193 transcriptional regulator, AraC family protein; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
       0.702
Tpau_0401
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro05186 methyltransferase.
 
   
 0.637
Tpau_2927
KEGG: rha:RHA1_ro06456 hypothetical protein.
  
     0.615
Tpau_0367
PFAM: protein of unknown function DUF1396; KEGG: mjl:Mjls_2429 hypothetical protein.
  
     0.601
Tpau_3330
KEGG: rop:ROP_39000 hypothetical membrane protein.
 
   
 0.595
Tpau_0414
KEGG: rha:RHA1_ro05188 hypothetical protein.
 
   
 0.584
Tpau_3312
PFAM: protein of unknown function DUF1396; KEGG: mbo:Mb1301c putative lipoprotein LprA.
  
     0.577
Tpau_1406
KEGG: mab:MAB_0672c hypothetical protein.
  
     0.571
Tpau_2592
KEGG: mmi:MMAR_2781 hypothetical protein; Belongs to the UPF0312 family.
  
     0.556
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.