Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Tpau_4086PFAM: Domain of unknown function DUF1905; KEGG: rop:ROP_36430 hypothetical protein. (95 aa)    
Predicted Functional Partners:
Tpau_4085
PFAM: Protein of unknown function DUF2236; KEGG: msm:MSMEG_6722 hypothetical protein.
       0.615
Tpau_0930
PFAM: GCN5-related N-acetyltransferase; KEGG: rsa:RSal33209_1228 putative acetyltransferase.
 
     0.534
Tpau_3095
KEGG: sen:SACE_4410 hypothetical protein.
 
     0.505
Tpau_2878
KEGG: mpa:MAP2795 hypothetical protein.
  
     0.470
Tpau_3623
KEGG: mav:MAV_4706 hypothetical protein.
  
     0.462
Tpau_1319
KEGG: rop:ROP_03480 hypothetical protein.
 
     0.422
Tpau_3125
PFAM: Protein of unknown function DUF2266, transmembrane; KEGG: ret:RHE_CH00472 hypothetical protein.
 
     0.418
Tpau_1071
KEGG: rop:ROP_16860 hypothetical protein.
  
     0.416
Tpau_0497
KEGG: mjl:Mjls_0128 hypothetical protein.
  
     0.413
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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