Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4097PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mmi:MMAR_4164 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Tpau_4098
KEGG: mjl:Mjls_5370 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V.
       0.758
Tpau_4099
PFAM: Protein of unknown function DUF2587; KEGG: rer:RER_02610 hypothetical protein.
       0.545
Tpau_0881
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.442
Tpau_1927
PFAM: RDD domain containing protein; KEGG: bcv:Bcav_3212 FHA domain containing protein.
  
     0.438
Tpau_4100
PFAM: ABC-2 type transporter; KEGG: cdi:DIP0175 ABC transporter permease.
       0.436
Tpau_4101
KEGG: rop:ROP_39770 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.436
Tpau_4102
PFAM: glycosyl transferase family 2; KEGG: rop:ROP_39760 galactofuranosyltransferase.
       0.436
Tpau_3922
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.432
Tpau_2062
Hypothetical protein; KEGG: similar to CG16995 CG16995-PA.
  
     0.428
Tpau_3440
KEGG: mav:MAV_2901 hypothetical protein.
  
 
   0.410
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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