Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4100PFAM: ABC-2 type transporter; KEGG: cdi:DIP0175 ABC transporter permease. (285 aa)    
Predicted Functional Partners:
Tpau_4101
KEGG: rop:ROP_39770 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.999
Tpau_4102
PFAM: glycosyl transferase family 2; KEGG: rop:ROP_39760 galactofuranosyltransferase.
 
  
 0.983
Tpau_1063
PFAM: glycosyl transferase family 2; KEGG: rop:ROP_63700 dTDP-rhamnose--alpha-D-N- acetylglucosamine-diphosphoryl polyprenol, alpha-3-L- rhamnosyl transferase.
 
  
 0.759
Tpau_4099
PFAM: Protein of unknown function DUF2587; KEGG: rer:RER_02610 hypothetical protein.
     
 0.750
Tpau_0161
TIGRFAM: UDP-galactopyranose mutase; KEGG: msm:MSMEG_6404 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like.
 
  
 0.701
Tpau_0162
KEGG: nfa:nfa1770 putative galactofuranosyltransferase.
 
  
 0.691
Tpau_4098
KEGG: mjl:Mjls_5370 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V.
 
     0.663
Tpau_0977
KEGG: rha:RHA1_ro06252 hypothetical protein.
  
     0.615
Tpau_1171
TIGRFAM: DivIVA domain; KEGG: rer:RER_41650 hypothetical protein.
  
     0.562
Tpau_1068
KEGG: mab:MAB_1363 hypothetical protein.
  
     0.559
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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