Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4106PFAM: GtrA family protein; KEGG: rha:RHA1_ro04079 hypothetical protein. (146 aa)    
Predicted Functional Partners:
Tpau_4120
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rer:RER_02340 oxidoreductase.
 
   
 0.829
Tpau_4119
PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro04078 FAD linked oxidoreductase.
 
   
 0.825
Tpau_4105
KEGG: rop:ROP_39730 putative mannosyltransferase.
       0.784
Tpau_4137
PFAM: cell wall arabinan synthesis protein; KEGG: mgi:Mflv_1175 cell wall arabinan synthesis protein.
 
     0.739
Tpau_4139
PFAM: cell wall arabinan synthesis protein; KEGG: rop:ROP_39460 arabinosyltransferase.
 
     0.739
Tpau_4138
PFAM: cell wall arabinan synthesis protein; KEGG: msm:MSMEG_6388 arabinosyltransferase B.
 
     0.737
Tpau_1783
PFAM: cell wall arabinan synthesis protein; KEGG: rop:ROP_39470 arabinosyltransferase.
 
     0.736
Tpau_4107
KEGG: rer:RER_11240 hypothetical protein.
       0.722
Tpau_4108
KEGG: rer:RER_11250 Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.722
Tpau_0164
PFAM: UbiA prenyltransferase; KEGG: rer:RER_02140 hypothetical protein.
 
     0.719
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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