Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpau_4109KEGG: nca:Noca_4603 hypothetical protein. (86 aa)    
Predicted Functional Partners:
glmS
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
 
     0.931
Tpau_4105
KEGG: rop:ROP_39730 putative mannosyltransferase.
 
     0.564
Tpau_4107
KEGG: rer:RER_11240 hypothetical protein.
       0.528
Tpau_4108
KEGG: rer:RER_11250 Xre family DNA-binding protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.528
Tpau_0987
PFAM: regulatory protein ArsR; KEGG: sgr:SGR_2124 ArsR family transcriptional regulator.
  
     0.497
Tpau_4106
PFAM: GtrA family protein; KEGG: rha:RHA1_ro04079 hypothetical protein.
       0.489
Tpau_0919
KEGG: cai:Caci_5177 hypothetical protein.
  
     0.449
Tpau_3074
KEGG: sgr:SGR_2124 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; regulatory protein MarR; SMART: regulatory protein ArsR.
  
     0.423
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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