Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4114TIGRFAM: amidohydrolase; KEGG: ttu:TERTU_4007 putative amidohydrolase/hippurate hydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein. (385 aa)    
Predicted Functional Partners:
Tpau_4112
PFAM: creatinase; peptidase M24; KEGG: ttu:TERTU_4005 peptidase, M24 family.
 
   
 0.858
Tpau_4113
2,4-diaminobutyrate 4-transaminase; KEGG: bfa:Bfae_15450 diaminobutyrate aminotransferase; TIGRFAM: 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.754
Tpau_4111
PFAM: Aldehyde Dehydrogenase; KEGG: bfa:Bfae_15470 NAD-dependent aldehyde dehydrogenase.
 
     0.750
Tpau_4115
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: oan:Oant_1441 RNA polymerase sigma factor.
       0.506
Tpau_0985
Amidohydrolase; KEGG: rer:RER_20770 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase dimerisation domain protein; peptidase M20; Belongs to the peptidase M20A family.
  
     0.499
Tpau_0380
Amidohydrolase; KEGG: msm:MSMEG_1679 AmiB; TIGRFAM: amidohydrolase; PFAM: peptidase M20; Belongs to the peptidase M20A family.
  
     0.484
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN-su ccinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
  
  
 0.404
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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