STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_4116PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rer:pREC1_0068 putative 3-hydroxyacyl-CoA dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)    
Predicted Functional Partners:
Tpau_4117
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: rer:pREC1_0069 acyl-CoA dehydrogenase.
  
  0.736
Tpau_1315
PFAM: MaoC domain protein dehydratase; Beta- ketoacyl synthase; Acyl transferase; domain of unknown function DUF1729; KEGG: nfa:nfa12570 putative fatty acid synthase.
  
 0.725
Tpau_3363
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rop:ROP_50970 putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.615
Tpau_4118
PFAM: regulatory protein TetR; KEGG: rer:pREC1_0074 TetR family transcriptional regulator.
       0.462
Tpau_4122
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mab:MAB_4790 oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.452
Tpau_2724
PFAM: Acyl transferase; KEGG: nfa:nfa16150 acyl-carrier-protein S- malonyltransferase.
 
 
 0.439
Tpau_2468
PFAM: Beta-ketoacyl synthase; KEGG: mva:Mvan_3756 3-oxoacyl-(acyl carrier protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.433
Tpau_1613
KEGG: cai:Caci_2470 hypothetical protein.
   
 
 0.432
Tpau_2726
PFAM: Beta-ketoacyl synthase; KEGG: mva:Mvan_3756 3-oxoacyl-(acyl carrier protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.432
Tpau_2981
PFAM: sulfatase; KEGG: rer:RER_16070 arylsulfatase.
   
 
 0.432
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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