Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4123PFAM: periplasmic binding protein; KEGG: cdi:DIP1062 putative iron-siderophore uptake system exported solute-binding component. (346 aa)    
Predicted Functional Partners:
Tpau_3756
KEGG: sco:SCO0495 iron-siderophore ABC-transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.966
Tpau_3758
PFAM: transport system permease protein; KEGG: sco:SCO0497 iron-siderophore permease transmembrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.935
Tpau_3757
PFAM: transport system permease protein; KEGG: sgr:SGR_6712 iron ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.898
Tpau_2663
PFAM: periplasmic binding protein; KEGG: cjk:jk1887 putative iron ABC transport system, solute-binding protein.
  
  
 0.770
Tpau_2664
PFAM: transport system permease protein; KEGG: car:cauri_0742 iron ABC transport system, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.725
Tpau_2666
KEGG: ypb:YPTS_4078 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.700
Tpau_2665
PFAM: transport system permease protein; KEGG: kra:Krad_3704 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.654
Tpau_4122
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mab:MAB_4790 oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.608
Tpau_4121
KEGG: rer:RER_02330 arabinosyltransferase AftA.
       0.603
Tpau_3775
KEGG: sco:SCO7217 iron ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.579
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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