Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_4124PFAM: metallophosphoesterase; KEGG: rha:RHA1_ro06188 hypothetical protein. (554 aa)    
Predicted Functional Partners:
Tpau_4125
KEGG: rle:RL2357 hypothetical protein.
       0.518
Tpau_4123
PFAM: periplasmic binding protein; KEGG: cdi:DIP1062 putative iron-siderophore uptake system exported solute-binding component.
     
 0.506
Tpau_0370
KEGG: rop:ROP_52280 hypothetical membrane protein.
  
     0.484
Tpau_2241
KEGG: svi:Svir_03790 hypothetical protein.
   
 
 0.465
Tpau_2242
KEGG: nfa:nfa51010 hypothetical protein.
   
 
 0.465
lysS-2
TIGRFAM: lysyl-tRNA synthetase; KEGG: krh:KRH_21510 putative lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); protein of unknown function DUF472; protein of unknown function DUF471; protein of unknown function DUF470; nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
     0.426
Tpau_4126
PFAM: monooxygenase FAD-binding; KEGG: ach:Achl_3547 monooxygenase FAD-binding.
     
 0.419
Tpau_0190
KEGG: sma:SAV_1295 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
 
     0.417
Tpau_4121
KEGG: rer:RER_02330 arabinosyltransferase AftA.
       0.402
Tpau_4122
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mab:MAB_4790 oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.402
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.