Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Tpau_4126PFAM: monooxygenase FAD-binding; KEGG: ach:Achl_3547 monooxygenase FAD-binding. (323 aa)    
Predicted Functional Partners:
Tpau_0310
PFAM: monooxygenase FAD-binding; KEGG: sco:SCO3245 salicylate hydroxylase (secreted protein).
  
     0.608
Tpau_4125
KEGG: rle:RL2357 hypothetical protein.
       0.605
Tpau_1502
PFAM: Methyltransferase type 12; Methyltransferase type 11; methyltransferase small; KEGG: kse:Ksed_01410 methylase involved in ubiquinone/menaquinone biosynthesis.
 
 
 0.503
Tpau_1503
O-pyrocatechuate decarboxylase; KEGG: bur:Bcep18194_B3061 amidohydrolase 2; PFAM: amidohydrolase 2.
 
  
 0.423
Tpau_4124
PFAM: metallophosphoesterase; KEGG: rha:RHA1_ro06188 hypothetical protein.
     
 0.419
Tpau_3352
PFAM: fatty acid hydroxylase; KEGG: nfa:nfa53570 hypothetical protein.
   
 
 0.417
Tpau_0401
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro05186 methyltransferase.
   
 0.406
Tpau_0435
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: rha:RHA1_ro05204 3-demethylubiquinone-9 3- methyltransferase.
   
 0.406
Tpau_0482
PFAM: Methyltransferase type 12; KEGG: rop:ROP_04910 hypothetical protein.
   
 0.406
Tpau_2918
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rer:RER_23720 methyltransferase.
   
 0.406
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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