Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_4153PFAM: protein of unknown function DUF1345; KEGG: msl:Msil_0817 protein of unknown function DUF1345. (203 aa)    
Predicted Functional Partners:
Tpau_4152
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nfa:nfa32530 putative transporter.
       0.568
Tpau_4154
KEGG: hypothetical protein.
       0.560
Tpau_4149
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: nfa:nfa32500 putative transporter permease.
       0.475
Tpau_4150
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nfa:nfa32510 putative ABC transporter permease.
       0.475
Tpau_4151
KEGG: nfa:nfa32520 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase.
       0.475
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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